# Machine Learning/HMM

From Noisebridge

< Machine Learning(Difference between revisions)

(→Implementations) |
|||

Line 5: | Line 5: | ||

=== Implementations === | === Implementations === | ||

− | |||

*[http://ghmm.sourceforge.net/ GHMM] (C) | *[http://ghmm.sourceforge.net/ GHMM] (C) | ||

*[http://hmmer.janelia.org HMMER] (compiled C-apps for Protein (possibly speech) analysis) | *[http://hmmer.janelia.org HMMER] (compiled C-apps for Protein (possibly speech) analysis) | ||

Line 11: | Line 10: | ||

*[http://www.cs.ubc.ca/~murphyk/Software/HMM/hmm.html HMM Toolbox] (MATLAB) | *[http://www.cs.ubc.ca/~murphyk/Software/HMM/hmm.html HMM Toolbox] (MATLAB) | ||

*[http://code.google.com/p/jahmm/ jahmm] (Java) | *[http://code.google.com/p/jahmm/ jahmm] (Java) | ||

+ | |||

+ | ==== R ==== | ||

+ | * [http://cran.r-project.org/web/packages/HMM/index.html HMM]: very simple hidden markov models | ||

+ | * [http://cran.r-project.org/web/packages/hmm.discnp/index.html hmm.discnp]: good, allows multiple observations | ||

+ | * [http://cran.r-project.org/web/packages/msm/index.html msm]: continuous time, with covariates |

## Revision as of 20:59, 4 August 2010

## Contents |

## Hidden Markov Models

### Papers/Tutorials

### Implementations

- GHMM (C)
- HMMER (compiled C-apps for Protein (possibly speech) analysis)
- logilab-hmm (Python)
- HMM Toolbox (MATLAB)
- jahmm (Java)

#### R

- HMM: very simple hidden markov models
- hmm.discnp: good, allows multiple observations
- msm: continuous time, with covariates