# Machine Learning/HMM

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< Machine Learning(Difference between revisions)

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ThomasLotze (Talk | contribs) (→R) |
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* [http://cran.r-project.org/web/packages/hmm.discnp/index.html hmm.discnp]: allows observations of multiple runs | * [http://cran.r-project.org/web/packages/hmm.discnp/index.html hmm.discnp]: allows observations of multiple runs | ||

* [http://cran.r-project.org/web/packages/msm/index.html msm]: continuous time, with covariates, multiple runs | * [http://cran.r-project.org/web/packages/msm/index.html msm]: continuous time, with covariates, multiple runs | ||

+ | * Example | ||

+ | ** [[Machine Learning/HMM Example | example]] | ||

+ | ** [[Machine_Learning/student_data.csv | student_data.csv]] |

## Revision as of 21:15, 4 August 2010

## Contents |

## Hidden Markov Models

### Papers/Tutorials

### Implementations

- GHMM (C)
- HMMER (compiled C-apps for Protein (possibly speech) analysis)
- logilab-hmm (Python)
- HMM Toolbox (MATLAB)
- jahmm (Java)
- I found Mathieu Blondel's writeup really helpful -- jahmm is a good package

#### R

- HMM: very simple hidden markov models
- hmm.discnp: allows observations of multiple runs
- msm: continuous time, with covariates, multiple runs
- Example