# Machine Learning/HMM

From Noisebridge

## Contents |

## [edit] Hidden Markov Models

### [edit] Papers/Tutorials

### [edit] Implementations

- GHMM (C)
- HMMER (compiled C-apps for Protein (possibly speech) analysis)
- logilab-hmm (Python)
- HMM Toolbox (MATLAB)
- jahmm (Java)
- I found Mathieu Blondel's writeup really helpful -- jahmm is a good package

#### [edit] R

- HMM: very simple hidden markov models
- hmm.discnp: allows observations of multiple runs
- msm: continuous time, with covariates, multiple runs
- Example