Editing Machine Learning/Kaggle HIV
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http://kaggle.com/hivprogression | |||
*How to Handle DNA Sequences | *How to Handle DNA Sequences | ||
**Use [http://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] to organize sequences across rows ([http://en.wikipedia.org/wiki/List_of_sequence_alignment_software software]) | **Use [http://en.wikipedia.org/wiki/Sequence_alignment sequence alignment] to organize sequences across rows ([http://en.wikipedia.org/wiki/List_of_sequence_alignment_software software]) | ||
*There are two proteins we have sequences for - HIV Protease and HIV Reverse transcriptase. A great video that describes how these work is available here: | *There are two proteins we have sequences for - HIV Protease and HIV Reverse transcriptase. A great video that describes how these work is available here: | ||
**http://www.youtube.com/watch?v=RO8MP3wMvqg&feature=related | **http://www.youtube.com/watch?v=RO8MP3wMvqg&feature=related | ||
*HIV Protease helps cut up HIV proteins in to their right shapes once the cell starts producing them: | *HIV Protease helps cut up HIV proteins in to their right shapes once the cell starts producing them: | ||
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**PR Sequence Info: http://www.bioafrica.net/proteomics/POL-PRprot.html | **PR Sequence Info: http://www.bioafrica.net/proteomics/POL-PRprot.html | ||
**PR Drug Resistance Info: http://hivdb.stanford.edu/cgi-bin/PositionPhenoSummary.cgi | **PR Drug Resistance Info: http://hivdb.stanford.edu/cgi-bin/PositionPhenoSummary.cgi | ||
*Reverse Transcriptase takes the viral RNA and converts it into DNA to be integrated into the cell: | *Reverse Transcriptase takes the viral RNA and converts it into DNA to be integrated into the cell: |